http://ww2.cs.mu.oz.au/~arun/Site/mustang.html

http://tcoffee.vital-it.ch/cgi-bin/Tcoffee/tcoffee_cgi/index.cgi?stage1=1&daction=EXPRESSO(3DCoffee)::Regular

or maybe what you are searching for is Consurf ?
http://consurf.tau.ac.il/

Jürgen

On May 25, 2010, at 2:39 PM, Muhammed bashir Khan wrote:

> Dear All;
> 
> Can some body tell me a website for structure based sequence alignment,
> which can also pin point the similar and identical residues in different
> colors.
> 
> regards
> 
> Bashir
> 
> 
> 
> 
> -- 
> Muhammad Bashir Khan
> Department for Biomolecular Structural Chemistry
> Max F. Perutz Laboratories
> University of Vienna
> Campus Vienna Biocenter 5
> A-1030 Vienna
> Austria
> 
> Phone: +43(1)427752224
> Fax: +43(1)42779522

-
Jürgen Bosch
Johns Hopkins Bloomberg School of Public Health
Department of Biochemistry & Molecular Biology
Johns Hopkins Malaria Research Institute
615 North Wolfe Street, W8708
Baltimore, MD 21205
Phone: +1-410-614-4742
Lab:      +1-410-614-4894
Fax:      +1-410-955-3655
http://web.mac.com/bosch_lab/

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