Another alignment tool worth to keep an eye on is this one: http://foldit.wikia.com/wiki/Alignment_Tool
They are still debugging, but the plan is to release a standalone version after CASP9. Or at least a version that runs in a standalone FoldIt version. On Tue, May 25, 2010 at 15:18, Victor Alves <vdal...@fmv.utl.pt> wrote: > Hi Charlie > > > > I am so sorry I assumed development had halted, but I'm glad one of the > authors of ALINE has stepped in to restore the truth, and even more that > ALINE is still being taken care of. > > > > Hopefully those needed funds will materialize, for your sake and also for > the benefit of all the scientific community. > > > > I will e-mail you some suggestions. > > > > Cheers, > > > > Victor Alves > > > > ______________________________ > > > > VICTOR DIOGO ALVES, DVM PhD > > Professor Auxiliar > > Faculdade de Medicina Veterinária > > UTL - Lisboa > > __________________________ > > > > > > > > -----Original Message----- > From: CCP4 bulletin board [mailto:ccp...@jiscmail.ac.uk] On Behalf Of > Charlie Bond > Sent: terça-feira, 25 de Maio de 2010 4:48 > To: CCP4BB@JISCMAIL.AC.UK > Subject: Re: [ccp4bb] Alignment software > > > > Hi Victor, > > Thanks for recommending ALINE. > > > > It is not exactly true that development has stopped. It is just > > glacially slow as funding for such utilities is not easily obtained! > > > > Recommendations for improvements (to improve that potential) are > > well-received and a keen user can write their own plug-ins to achieve > > new functionality. > > > > Cheers, > > Charlie > > > > Victor Alves wrote: > >> Hi Mohd > >> > >> > >> > >> You can also check: ALINE (An Extensible WYSIWYG Protein Sequence > >> Alignment Editor for Publication Quality Figures) > >> > >> > >> > >> http://crystal.bcs.uwa.edu.au/px/charlie/software/aline/ > >> > >> > >> > >> It’s quite nice and has a lot of potential, although unfortunately it > >> seems that development of the software as stopped :-( > >> > >> > >> > >> Cheers > >> > >> > >> > >> Victor Alves > >> > >> > >> > >> > >> > >> > >> > >> *From:* CCP4 bulletin board [mailto:ccp...@jiscmail.ac.uk] *On Behalf Of > >> *Salameh, Mohd A., Ph.D. > >> *Sent:* sexta-feira, 21 de Maio de 2010 16:11 > >> *To:* CCP4BB@JISCMAIL.AC.UK > >> *Subject:* [ccp4bb] Alignment software > >> > >> > >> > >> Dear All, > >> > >> I’m trying to prepare an alignment figure of 2 proteins that highlight > >> conserved and similar residues and probably secondary structures; I will > >> greatly appreciate it if anybody can recommend a software that I can > >> use. Thanks, Mohd > >> > > > > -- > > Charlie Bond > > Professorial Fellow > > University of Western Australia > > School of Biomedical, Biomolecular and Chemical Sciences > > M310 > > 35 Stirling Highway > > Crawley WA 6009 > > Australia > > charles.b...@uwa.edu.au > > +61 8 6488 4406
