Does chainsaw not the opposite? Pruning a coordinate file based on non-conserved residues identified in a MSA? Yuan has a MSA of known structures and a sequence he wants to add to it. I am always keen to learn about alignment programs, it would be great to know how to use chainsaw for this problem.
On Tue, Jun 1, 2010 at 02:20, Eleanor Dodson <[email protected]> wrote: > chainsaw does just that > > eleanor > > 商元 wrote: >> >> Hello, everyone, >> I've a protein sequence of known domain. Based on structure alignment, >> I've got a alignment of those with known structures. Then how to add my >> sequence to the alignment?Any suggestions? >> Regards, >> Yuan SHANG >> >
