I have used JLigand v 0.2.1 to create a link between a Thr residues and a covalent adduct. The adduct refines well and shows up as a covalent bond in PyMOL. However, when I'm in Coot there is no bond present between the Thr OG1 and the ligand. I've loaded the Jligand link.lib file that I created and the cif for the ligand itself into Coot. Any ideas how to fix this?

Sean

Sean C. Gay, PhD
Postdoctoral Scholar
Skaggs School of Pharmacy and Pharmaceutical Sciences
University of California, San Diego
9500 Gilman Dr. #0703
La Jolla, CA 92093
Tel. (858)822-7804
Fax. (858)246-0089
Email. [email protected]

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