I have used JLigand v 0.2.1 to create a link between a Thr residues and
a covalent adduct. The adduct refines well and shows up as a covalent
bond in PyMOL. However, when I'm in Coot there is no bond present
between the Thr OG1 and the ligand. I've loaded the Jligand link.lib
file that I created and the cif for the ligand itself into Coot. Any
ideas how to fix this?
Sean
Sean C. Gay, PhD
Postdoctoral Scholar
Skaggs School of Pharmacy and Pharmaceutical Sciences
University of California, San Diego
9500 Gilman Dr. #0703
La Jolla, CA 92093
Tel. (858)822-7804
Fax. (858)246-0089
Email. [email protected]