TargetDB performs this type of analysis for structures deposited by structural genomics projects.
Tabulations of novel depositions can be found at http://targetdb.pdb.org/Metrics/MilestonesTables.html.
The data from which these statistics were calculated from sequence clustering performed by the RCSB PDB. Sequence clustering is updated weekly at ftp://resources.rcsb.org/sequence/clusters/.
Archived, time-stamped files containing sequence clustering data from the weekly update from 2007 - 2009 are available from ftp://snapshots.rcsb.org/20090105/pub/pdb/derived_data/NR/blastclust/ archive/.
Best, Christine RCSB Protein Data Bank -------- Original Message -------- Subject: [ccp4bb] Where to find "novelty" of PDBids? Date: Wed, 9 Jun 2010 09:52:46 +0100 From: Frank von Delft <[email protected]> Reply-To: Frank von Delft <[email protected]> To: [email protected] Hi, for an analysis I need the sequence identity of any PDBid to its closest match in the PDB *at the time it was deposited*. It seems like something somebody would have done before; any thoughts where to find it? Cheers phx
