Re: [ccp4bb] How to get a seq.data file from a FASTA file?

[Francois Berenger]

Reply to myself:

The author changed his program so that only the
2 first columns are needed now, and they are obvious enough.

Regards,
F.

Francois Berenger wrote:

Hello,

First, sorry for this not directly CCP4-related question.

I have some software here that requires a seq.data file as one
of its inputs: any idea on how to create such a file from a FASTA file?

Here is how the expected file looks like for protein 101M (it is named seq.dat):

---
    1   MET    1    9
    2   VAL    1    9
    3   LEU    1    8
    4   SER    1    8
    5   GLU    2    9
    6   GLY    2    9
    7   GLU    2    9
    8   TRP    2    9
    9   GLN    2    9
   10   LEU    2    9
[...]
  147   TYR    2    9
  148   LYS    2    8
  149   GLU    2    6
  150   LEU    1    2
  151   GLY    1    7
  152   TYR    1    8
  153   GLN    1    9
  154   GLY    1    9
---

Thanks a lot,
Francois.