Sure. But if I start with model that has no hydrogens, they will be
generated but not passed to the output, right. just like refmac.
On Wed, 2010-09-15 at 14:52 -0700, Pavel Afonine wrote:
> Dear Ed,
>
> On 9/15/10 2:47 PM, Ed Pozharski wrote:
> > On Wed, 2010-09-15 at 16:26 -0400, Phil Jeffrey wrote:
> >> So the riding hydrogen model is imperfect. At least with
> >> phenix.refine
> >> you can measure it, unlike the default behavior of REFMAC. (But you
> >> can
> >> tell it to write hydrogens out, I believe).
> >>
> > My impression is that default behavior of phenix.refine is the same - I
> > had to change parameters to include hydrogens in the output.
>
> No, if your input file contains H atoms, the output file will contain
> them too (in phenix.refine). You don't have to change any parameters for
> this.
>
> Pavel.
>
--
"I'd jump in myself, if I weren't so good at whistling."
Julian, King of Lemurs
