Hi, As far as I know, thanks to Ian, areaimol in its latest versions now has an option of showing the fraction of accessible area per residue (relative to its accessible surface in the Gly-X-Gly peptide) both in the log file and in the B-factor column of the pdb file it prodcues.
Cheers, Boaz ----- Original Message ----- From: Tim Gruene <[email protected]> Date: Tuesday, November 2, 2010 16:59 Subject: Re: [ccp4bb] Software to Produce Linear Map of Surface Accessible Residues To: [email protected] > Hello Buz, > > I do not know what you mean by 'linear map', but according to > its manual, the > ccp4-program "surface" writes a list of accessible are per atom > per residue, > which you could convert into the total fraction per residue with > not too much > effort. > > Is this what you are looking for? > > Cheers, Tim > > On Tue, Nov 02, 2010 at 10:36:56AM -0400, Buz Barstow wrote: > > Dear All, > > > > I'm looking for a software program to produce, given a 3D > atomic structure of a molecule, a linear map showing the surface > accessibility of residues in a protein structure. > > > > Would any one know of a program that can produce this sort of map. > > > > Thanks! and all the best, > > > > --Buz > > -- > -- > Tim Gruene > Institut fuer anorganische Chemie > Tammannstr. 4 > D-37077 Goettingen > > phone: +49 (0)551 39 22149 > > GPG Key ID = A46BEE1A > > Boaz Shaanan, Ph.D. Dept. of Life Sciences Ben-Gurion University of the Negev Beer-Sheva 84105 Israel Phone: 972-8-647-2220 ; Fax: 646-1710 Skype: boaz.shaanan
