Thanks Ian, but I was using the output from 2a for 2b running. Results are still different between 2 and 1. More curious is more second question, the region with identical ADPs still ended up with identical ADPs (although different from before running) after 1, and that's why I also tried 2.
Hailiiang > PS one other thought: in your run 2b you are not reading in (as TLSIN) > the TLSOUT file produced by run 2a. So run 2b is not starting from > the same point that it would have done as in run 1. > > I. > > On Sun, Dec 19, 2010 at 11:58 PM, Hailiang Zhang <zhan...@umbc.edu> wrote: >> Hi, >> >> I am using REFMAC 5.2.0019 to run the following script: >> *************** >> refmac5 hklin a xyzin b <<eof >> REFI TLSC ${CTLS} >> REFI BREF OVERall >> NCYC ${CC} >> ************** >> >> I thought this script will do CTLS cycles of TLS refinement followed by >> CC >> cycles of verall B and geometry refinement. Then I did the following 2 >> tests: >> ************ >> (1). CTLS=a, CC=b >> (2). CTLS=a, CC=0; followed by: CTLS=0, CC=b >> *********** >> The results are just very different from (1) and (2), and I am not sure >> why. >> >> By the way, my system has a small region with identical ADPs. After >> doing >> (2), the ADPs at this region becomes different; however, after doing >> (1), >> these ADPs are still identical, although different from the original >> ADPs. >> >> Thanks for any clarifications! >> >> Best Regards, Hailiang >> > >