It does work well. That is great! Many Thanks!
On 1/28/11, Pavel Afonine <[email protected]> wrote: > Hi Hui, > (sorry for non-ccp4 recipe) > IF I understand correctly what you want to do, then I guess you can achieve > this using Map Superposition: > > http://www.phenix-online.org/documentation/superpose_maps.htm > > and/or Structure Comparison tools in PHENIX: > > http://www.phenix-online.org/documentation/structure_comparison.htm > > where you can superpose many models and corresponding maps, and see all them > in one display, along with highlighted differences. > > Nat Echols, the author of both tools, is someone to ask should you have any > questions. > > Pavel. > > > On Fri, Jan 28, 2011 at 10:15 AM, RONG hui Rong > <[email protected]>wrote: > >> Dear All, >> >> I have the problem as follows, but I can not find the corresponding >> solution. Can somebody give me some suggestions? >> Many Thanks, >> Hui Rong >> >> ***************************************************************************************** >> [PyMOL] aligning electron density maps >> >> >> Eksterowicz, John >> Wed, 03 Mar 2004 15:03:43 -0800 >> >> I have a pdb and xplor file which contain two units of the same >> protein/inhibitor complex. What I am trying to do is align the two >> proteins to each other so I can compare the subunits. I can accomplish >> this by reading in the pdb file twice and aligning the b unit from the >> second pdb file to the a unit of the first pdb file. I then split >> everything into objects then delete what i don't want. In the end I >> have subunits a and b aligned to each other. >> >> I would like to be able to do the same thing for the electron denisty >> map. Is there a way to align maps? >> >> If I read in a protein and a map, then align the protein to another >> protein, the protein moves, but the map remains in it's original >> location. Can the map coordinates be transformed somehow? >> >> Is it possible to create some association with the protein and the map >> such that when the protein is aligned, the map will follow? >> >> Thanks, >> John >> >> ***************************************************************************************** >> >> On 1/28/11, RONG hui Rong <[email protected]> wrote: >> > >> > >> >
