Hello Bob, I am familiar a little with scripting but was hoping someone knew of an already existing tool. Alright, its off to perl then. Thanks, -c
On Tue, Mar 8, 2011 at 7:28 PM, Robert Immormino <[email protected]>wrote: > Hi Cale, > My advice would be to find someone local with experience in scripting > possibly in python or perl. This is a tractable problem with a bit of > scripting and if you aren't already experienced this may be a good > opportunity to delve into a bit of programing. > Good Luck, > -bob > > On Tue, Mar 8, 2011 at 7:20 PM, Cale Dakwar <[email protected]> wrote: > > Thanks for the quick reply. This is a very good resource but not quite > what > > I need. As far as I can tell, this resource is based on a dataset from > > 10-08-1998 and then only included x-ray crystal structure with better > than 2 > > angstrom data. I also can't in this database a mention of the PDB > > structures in which e.g. the shortest His-His distances have been > observed. > > - C > > > > On Tue, Mar 8, 2011 at 6:19 PM, Ed Pozharski <[email protected]> > wrote: > >> > >> On Tue, 2011-03-08 at 17:44 -0500, Cale Dakwar wrote: > >> > Amongst other things, I want e.g. generate a histogram from this table > >> > and determine e.g. the shortest HisND1 pair distance observed and the > >> > structure in which this happens. > >> > >> For this specific question this can be useful > >> > >> http://www.biochem.ucl.ac.uk/bsm/sidechains/index.html > >> > >> > >> > >> -- > >> "I'd jump in myself, if I weren't so good at whistling." > >> Julian, King of Lemurs > >> > > > > >
