Only bear in mind that superpose relies on the presence of secondary structure, so that your selections should always include at least 3 SSEs.
Eugene. On 14 Apr 2011, at 15:45, goslar wrote: > (Should have) found it! > http://www.ccp4.ac.uk/html/pdbcur.html#atom_selection > Did not fully RTM. My aplogies. > W. > > > ---------- Forwarded message ---------- > From: goslar <[email protected]> > Date: Thu, Apr 14, 2011 at 10:19 AM > Subject: superpose atom selection > To: [email protected] > > > Hello all, > from the ccp4 manual: > http://www.ccp4.ac.uk/html/superpose.html > <snip> > superpose foo_1st.pdb [-s CID1] foo_2nd.pdb [-s CID2] [ foo_out.pdb ] > > where [-s CID1/2] are optional selection strings in MMDB convention, > and [foo_out.pdb] is optional output file. > </snip> > Please, could someone point me to documentation of said MMDB convention. > Many thanks in advance, > Wolfram Tempel
