Hi François, Chainsaw should do the job for you if you input a clustal alignment. Cheers David
Le 26 sept. 2011 à 17:44, Francois Berenger a écrit : > Hello, > > I have one bound complexe (a ligand + a protein in holo conformation). > I also have the apo structure for a very similar protein. > > Is there a tool to create a new PDB, whose coordinates are > taken from the holo structure but residue names and numbers > are taken from the alo structure (by looking at the corresponding > residues in the output of a sequence alignment program)? > > I thought about doing a script using clustalw for the alignment > part, but the task seems not trivial. > > Thanks a lot, > Francois.
