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And you do have read access to
/usr/local/ccp4/6.2.0/ccp4-6.2.0/share/python/CCP4pipeline.py
(on our installation, the mode is actually 755, but I suppose 644 should
be sufficient).
You can set PYTHONVERBOSE to 1 or higher in the shell you start ccp4i
from to see what python is doing ('man python').
Tim
On 10/18/2011 11:34 AM, Frank von Delft wrote:
> Mine reads:
> /usr/local/ccp4/6.2.0/ccp4-6.2.0/share/python:/usr/local/ccpnmr/ccpnmr1.0/python
>
>
> That should work, right? Where else can I look, for the failing
> import? This is a lettuce-fresh install, pulled straight off web and
> installed with all defaults.
>
> Cheers
> phx.
>
>
> On 18/10/2011 08:38, Tim Gruene wrote:
> Hi Frank,
>
> it may not be the python binary itself but the PYTHONPATH which is
> incorrectly set. After initialising ccp4, mine reads
> tg@slartibartfast:~$ echo $PYTHONPATH
> /xtal/Suites/CCP4/ccp4-6.2.0/share/python:
> which is modified around line 231 in $CBIN/include/ccp4.setup
>
> My python binary is /usr/bin/python, and I have used buccaneer without
> errors.
>
> Tim
>
>
>
> On 10/17/2011 09:30 PM, Frank von Delft wrote:
>>>> Hi, we got around to switching to ccp4 version 6.2.0, but now buccaneer
>>>> fails from the GUI. Below is what shows up if you view the com file
>>>> before execution; and below that the logfile.
>>>>
>>>> Seems to me it's using the wrong python executable; the first one on my
>>>> path is certainly nothing to do with ccp4, so now wonder it can't
>>>> import.
>>>>
>>>> Shouldn't python be invoked explicitly with its full path? Where can I
>>>> set this? (Mind you, setting it in the Run&View didn't work.)
>>>> Cheers
>>>> phx
>>>>
>>>>
>>>>
>>>>
>>>> *Run&View Com File: *
>>>> python -u /usr/local/ccp4/6.2.0/ccp4-6.2.0/bin/buccaneer_pipeline -stdin
>>>>
>>>>
>>>> *Logfile*
>>>> #CCP4I VERSION CCP4Interface 2.1.0
>>>> #CCP4I SCRIPT LOG buccaneer_pipeline
>>>> #CCP4I DATE 17 Oct 2011 18:45:20
>>>> #CCP4I USER loretta
>>>> #CCP4I PROJECT PROJECT
>>>> #CCP4I JOB_ID 13
>>>> #CCP4I SCRATCH /tmp/loretta
>>>> #CCP4I HOSTNAME hestia.sgc.ox.ac.uk
>>>> #CCP4I PID 13684
>>>>
>>>> ***************************************************************************
>>>>
>>>> * Information from CCP4Interface script
>>>> ***************************************************************************
>>>>
>>>> The program run with command: python -u
>>>> /usr/local/ccp4/6.2.0/ccp4-6.2.0/bin/buccaneer_pipeline -stdin
>>>> has failed with error message
>>>> Traceback (most recent call last):
>>>> File "/usr/local/ccp4/6.2.0/ccp4-6.2.0/bin/buccaneer_pipeline", line
>>>> 3, in<module>
>>>> from CCP4pipeline import Control
>>>> ImportError: No module named CCP4pipeline
>>>> ***************************************************************************
>>>>
>>>>
>>>>
> -- - --
> Dr Tim Gruene
> Institut fuer anorganische Chemie
> Tammannstr. 4
> D-37077 Goettingen
>
> GPG Key ID = A46BEE1A
>
- --
- --
Dr Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen
GPG Key ID = A46BEE1A
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