Rajesh,
I think there is a simpler explanation to your problems but we need to
go back to the installation of adxv on your linux machine.
How did you extract adxv binary from the *.gz file?
I've actually learned yesterday that if you use graphic tools to
extract the binary the resulting file will not be fully functional!
Windows open but the file selection dialogue is locked and the selection
pattern is 0.*.
Use command line 'gunzip' to extract the binary.
Don't forget to 'chmod +x' on the resulting file and you should have a
working adxv.
Andrzej
On 11/22/11 3:07 PM, Ian Tickle wrote:
Rajesh
I use adxv (as well as xemacs, xdsview, imosflm, hklview, ipdisp etc)
over ssh/Cygwin X11 from Windows XP to a Centos (like RedHat) server
with no problems at all.
I suspect your xming either just doesn't have the requisite X11 libs
or somehow they have not gotten installed on your system. Can you try
Cygwin/X11, it's very easy to install.
Cheers
-- Ian
On 22 November 2011 13:49, Rajesh kumar<ccp4...@hotmail.com> wrote:
Dear Tim,
Yes, I have windows 7 computer and use ccp4 and phenix through xming/putty
and I run them over linux lab computer.
Sorry if I have confused you all with insufficient information.
On the lab linux system, I installed everything you suggested in BASH and
it works but not completely.
Core manager kind of not interested to look in to it and I dont know much to
understand everything you nice people saying here.
So instead I used idiffdisp and it opens the image. But wanted adxv to work
thats all.
Thanks
Raj
Date: Tue, 22 Nov 2011 14:41:00 +0100
From: t...@shelx.uni-ac.gwdg.de
To: ccp4...@hotmail.com
CC: CCP4BB@JISCMAIL.AC.UK
Subject: Re: [ccp4bb] adxv
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Dear Rajesh,
are you saying that the computer you are sitting in front of is a
windows computer?
Are you sure you have been using CCP4 and phenix through an
ssh-connection and not the respective windows-binaries?
I am not familiar with windows and the possible existence of
X11-clients, but I would think that most suggestions to you assumed that
your client computer was also a linux-machine.
Cheers,
Tim
On 11/22/2011 02:27 PM, Rajesh kumar wrote:
I don't know if I need that installed on my windows computer terminal.On
the server also I could run adxv. Thought of using other ccp4 utilities.
Thanks for everyone for the help. I give up.
Regards,Rajesh
Date: Mon, 21 Nov 2011 11:36:14 -0500
From: ber...@upstate.edu
Subject: Re: [ccp4bb] adxv
To: CCP4BB@JISCMAIL.AC.UK
yum install lesstif ?
but wouldn't the motif stuff be required for the X-server, i.e. your
terminal, not for the
server running adxv?
Rajesh kumar wrote:
Dear Mark,
$ locate XKeysymDB - didnt come with any thing suggests probably
openmotif lib is not
installed.
I linux server has Fedora and I am using latest version of Adxv so
details on the sbgrid
suggest its same problem.
So how would I fix this.
Thanks for your time.
Regards
Rajesh
Date: Sun, 20 Nov 2011 23:18:32 +0000
Subject: Re: [ccp4bb] adxv
From: mark.x.bro...@gmail.com
To: ccp4...@hotmail.com
CC: CCP4BB@jiscmail.ac.uk
Dear Rajesh,
Are you using the Openmotif library? If so, do you
have an XKeysymDB file installed?
In as shell, issue:
$ locate XKeysymDB
You may need to symlink it to /usr/X11R6/lib/X11/XKeysymDB if it is
elsewhere [1].
I suspect you're not the only one to have seen this [2].
I hope this helps.
Mark
[1]
ftp://ftp.parallelgeo.com/SPW_Products/Linux/Current_Release/ReadMe_for_recent_Linux_distributions.txt
[2] http://sbgrid.org/news/newsletters/2009/06 (search for the
string "adxv")
On 20 November 2011 19:45, Rajesh kumar<ccp4...@hotmail.com> wrote:
Dear Tim,
Thanks. Your suggestion of adding to PATH works and its not
completely functional may
be due to the Ximg/ssh or some thing to do with display.
All three windows opened but couldn't open any image as it didn't
display in the list
of autoload window. Pattern shows *.0.
$adxv pin8_1_180.img
(standard_in) 1: parse error
(standard_in) 1: parse error
(standard_in) 1: parse error
beam_center x = pixels , mm
beam_center y = pixels , mm
distance = mm
overload = counts
pixelsize = 0.172 mm
wavelength = Angstroem
Adxv Version 1.9.4-beta
Copyright (C) 1994-2007 by Andrew Arvai, Area Detector Systems
Corporation
Using 24-bit TrueColor visual
Warning: translation table syntax error: Unknown keysym name:
osfActivate
Warning: ... found while parsing ':<Key>osfActivate:
ManagerParentActivate()'
Warning: String to TranslationTable conversion encountered errors
Warning: translation table syntax error: Unknown keysym name:
osfBeginLine
Warning: ... found while parsing ':<Key>osfBeginLine:
ManagerGadgetTraverseHome()'
Warning: String to TranslationTable conversion encountered errors
Warning: translation table syntax error: Unknown keysym name:
osfHelp
Warning: ... found while parsing ':<Key>osfHelp:
ManagerGadgetHelp()'
Warning: String to TranslationTable conversion encountered errors
Warning: translation table syntax error: Unknown keysym name:
osfActivate
Warning: ... found while parsing ':<Key>osfActivate:
ManagerParentActivate()'
Warning: String to TranslationTable conversion encountered errors
Warning: translation table syntax error: Unknown keysym name:
osfActivate
Warning: ... found while parsing ':<Key>osfActivate:
PrimitiveParentActivate()'
Warning: String to TranslationTable conversion encountered errors
Warning: translation table syntax error: Unknown keysym name:
osfHelp
Warning: ... found while parsing ':<Key>osfHelp: Help()'
Warning: String to TranslationTable conversion encountered errors
Warning: translation table syntax error: Unknown keysym name:
osfActivate
Warning: ... found while parsing ':<Key>osfActivate:
PrimitiveParentActivate()'
Warning: String to TranslationTable conversion encountered errors
Warning: translation table syntax error: Unknown keysym name:
osfCancel
Warning: ... found while parsing ':<Key>osfCancel: MenuEscape()'
Warning: String to TranslationTable conversion encountered errors
Warning: translation table syntax error: Unknown keysym name:
osfSelect
Warning: ... found while parsing ':<Key>osfSelect:
ArmAndActivate()'
Warning: String to TranslationTable conversion encountered errors
Warning: translation table syntax error: Unknown keysym name:
osfActivate
Warning: ... found while parsing ':<Key>osfActivate:
PrimitiveParentActivate()'
Warning: String to TranslationTable conversion encountered errors
Warning: Locale not supported for XmbTextListToTextProperty
Warning: Cannot convert XmString to compound text
Warning: translation table syntax error: Unknown keysym name:
osfPrimaryPaste
Warning: ... found while parsing ':m
<Key>osfPrimaryPaste:cut-primary()'
Warning: String to TranslationTable conversion encountered errors
Warning: translation table syntax error: Unknown keysym name:
osfActivate
Warning: ... found while parsing ':<Key>osfActivate:
PrimitiveParentActivate()'
Warning: String to TranslationTable conversion encountered errors
Warning: translation table syntax error: Unknown keysym name:
osfActivate
Warning: ... found while parsing ':<Key>osfActivate:
PrimitiveParentActivate()'
Warning: String to TranslationTable conversion encountered errors
Warning: translation table syntax error: Unknown keysym name:
osfSelect
Warning: ... found while parsing ':<Key>osfSelect:
ArmAndActivate()'
Warning: String to TranslationTable conversion encountered errors
Warning: translation table syntax error: Unknown keysym name:
osfPrimaryPaste
Warning: ... found while parsing ':m
<Key>osfPrimaryPaste:cut-primary()'
Warning: String to TranslationTable conversion encountered errors
Warning: translation table syntax error: Unknown keysym name:
osfSelect
Warning: ... found while parsing ':<Key>osfSelect:
ManagerGadgetSelect()'
Warning: String to TranslationTable conversion encountered errors
Warning: translation table syntax error: Unknown keysym name:
osfSelect
Warning: ... found while parsing ':<Key>osfSelect:
MenuBarGadgetSelect()'
Warning: String to TranslationTable conversion encountered errors
Warning: translation table syntax error: Unknown keysym name:
osfActivate
Warning: ... found while parsing ':<Key>osfActivate:
ManagerParentActivate()'
Warning: String to TranslationTable conversion encountered errors
Warning: translation table syntax error: Unknown keysym name:
osfHelp
Warning: ... found while parsing ':<Key>osfHelp: MenuHelp()'
Warning: String to TranslationTable conversion encountered errors
Warning: translation table syntax error: Unknown keysym name:
osfActivate
Warning: ... found while parsing ':<Key>osfActivate:
PrimitiveParentActivate()'
Warning: String to TranslationTable conversion encountered errors
Warning: translation table syntax error: Unknown keysym name:
osfActivate
Warning: ... found while parsing ':<Key>osfActivate:
DrawingAreaInput()
ManagerParentActivate()'
Warning: String to TranslationTable conversion encountered errors
Warning: translation table syntax error: Unknown keysym name:
osfUp
Warning: ... found while parsing ':<Key>osfUp: DrawingAreaInput()
ManagerGadgetTraverseUp()'
Warning: String to TranslationTable conversion encountered errors
Warning: translation table syntax error: Unknown keysym name:
osfSelect
Warning: ... found while parsing ':<Key>osfSelect: KeySelect()'
Warning: String to TranslationTable conversion encountered errors
Warning: translation table syntax error: Unknown keysym name:
osfSelect
Warning: ... found while parsing ':<Key>osfSelect: KeySelect()'
Warning: String to TranslationTable conversion encountered errors
Warning: translation table syntax error: Unknown keysym name:
osfCancel
Warning: ... found while parsing '<Key>osfCancel: MenuEscape()'
Warning: String to TranslationTable conversion encountered errors
Warning: translation table syntax error: Unknown keysym name:
osfBeginLine
Warning: ... found while parsing ':s c<Key>osfBeginLine:
ListBeginDataExtend()'
Warning: String to TranslationTable conversion encountered errors
Warning: translation table syntax error: Unknown keysym name:
osfBeginLine
Warning: ... found while parsing ':c<Key>osfBeginLine:
ActionGrab(SWTopLine)'
Warning: String to TranslationTable conversion encountered errors
Warning: Locale not supported for XmbTextListToTextProperty
Warning: Cannot convert XmString to compound text
Warning: Locale not supported for XmbTextListToTextProperty
Warning: Cannot convert XmString to compound text
No such file: 0.172
Date: Sat, 19 Nov 2011 22:27:25 +0100
From: t...@shelx.uni-ac.gwdg.de
To: ccp4...@hotmail.com
CC: CCP4BB@JISCMAIL.AC.UK
Subject: Re: [ccp4bb] adxv
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Dear Raj,
your first two error messages are because your 'current working
directory' is not part of your bash's PATH variable. As you
login, type
export PATH=$PATH:/full/path/to/your/work/adxv
then run adxv.
I am not sure whether this will prevent the last error to occur,
but
since you can run other graphical programs there is a fair
chance.
Cheers,
Tim
On 11/19/2011 05:53 PM, Rajesh kumar wrote:
Dear All,
I have connected to unix server of the lab through
ssh/xming/x11. I can run open
phenix and CCP4 GUI.
I am trying to adxv to see images but I am unable to do so.
I have got two files adxv and adxv.i686FC2 sitting in my
work/adxv/.
when i run adxv in bash
bash: adxv: command not found
when i run ./adxv in bash
$ ./adxv /home/raj/work/wen/pin8/pin8_1_001.img
(standard_in) 1: parse error
(standard_in) 1: parse error
(standard_in) 1: parse error
beam_center x = pixels , mm
beam_center y = pixels , mm
distance = mm
overload = counts
pixelsize = 0.172 mm
wavelength = Angstroem
./adxv: line 39: adxv.i686FC2_static: command not found
when i do
$ ./adxv.i686FC2_static /home/raj/work/wen/pin8/pin8_1_001.img
-X11TransSocketINETConnect() cnat get address for
loaclhost:6011: name or service
not known
error: cannot open display
I cant use Nxclient.
Thanks
Raj
- --
Dr Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen
- --
- --
Dr Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen
GPG Key ID = A46BEE1A
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