Re: [ccp4bb] Did anyone here know how to config a local protein secondary structure prediction server?

[Boaz Shaanan]

Hi, I would just submit your sequence to Phyre (http://www.sbg.bio.ic.ac.uk/~phyre/). You'll get, among other good things, the secondary structure predictions, perhaps even a 3-D structure prediction, depending on the similarity of your sequence to that of known structures.            Cheers,                       Boaz     Boaz Shaanan, Ph.D.                                         Dept. of Life Sciences                                      Ben-Gurion University of the Negev                          Beer-Sheva 84105                                            Israel                                                                                                                  E-mail: bshaa...@bgu.ac.il Phone: 972-8-647-2220  Skype: boaz.shaanan                  Fax:   972-8-647-2992 or 972-8-646-1710                          From: CCP4 bulletin board [CCP4BB@JISCMAIL.AC.UK] on behalf of 商元 [shangyuan5...@gmail.com] Sent: Sunday, December 04, 2011 2:00 PM To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] Did anyone here know how to config a local protein secondary structure prediction server? Hi, everyone,    I want to run plenty secondary structure prediction works and online prediction costs a lot of time. So I expect local software for secondary structure prediction will greatly help to my work. Has anyone ever configed such local secondary structure prediction server? Any suggestion will be welcome. Thanks&regards, Yuan SHANG