LIGPLOT will show this graphically, if the correct parameters are set in
ligplot.prm, but not state the interactions explicitly:
http://www.ebi.ac.uk/thornton-srv/software/LIGPLOT/
The relevant lines in ligplot.prm:
PLOT PARAMETERS
---------------
Y<- Include: Hydrophobic interactions - (Y/N)?
HTH,
Iain
On Wednesday,Dec 14 12:34 PM, Luthra,Amit wrote:
Hi Everyone
I have to calculate hydrophobic interactions in pdb files. Is any
server available for this type of calculation?
Thanks in advance
Amit
