Add an ATOM AT THE POINTER - call to water I guess -write it to your coordinate file, then redo the refinement - the green blob should disappeat.

Could that O pointing towards the grenn blob be flipped though? there is a water in rather a strange position opposite, although the picture might mislead..?
eleanor

On 01/04/2012 05:21 AM, Dialing Pretty wrote:
Dear All,lob should disappear.
After I select the FoFcwt map, I have tried to change the green blob to an 
atom. First I point a green blob, then I use calculate-Model/Fit/Refine-Pointer 
Atom Type to add any atom.

My question is, although the atom can be added, there is no indication that the 
volume of the green blob changes. If I am right, the green blob should 
disappear if the atom is correctly selected.

How do you solve this problem? How about the red blobs in the attached 
Screenshot?

I am looking forward to getting your reply.

Cheers,

Dialing

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