-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Dear Deepak,
the only atom type present in DNA and not in Proteins would be the Phosphorus. You can probably add this to sc_radii.lib yourself with the line *** P* 1.80 the radius stems from http://en.wikipedia.org/wiki/Phosphorus and the link to http://en.wikipedia.org/wiki/Van_der_Waals_radius provides you with the reference. The results will hardly differ if you modify this value within 100%, I guess. Cheers, Tim On 02/07/2012 04:19 AM, Deepak Thankappan Nair wrote: > Dear All > For calculation of the shape complementarity index using the Sc > program between a protein and DNA surface, does anybody have a > modified radii.lib file that includes information about DNA atoms? > Also, is there any reference that has information regarding the atomic > radii of DNA atoms? > thanks > Deepak > - -- - -- Dr Tim Gruene Institut fuer anorganische Chemie Tammannstr. 4 D-37077 Goettingen GPG Key ID = A46BEE1A -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.10 (GNU/Linux) Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/ iD8DBQFPMPu1UxlJ7aRr7hoRAhAYAKDHJzkHfEPwcHO99FAV57zOrsYasACgvO/V CtUM1Z8x0NSl0cXK4A4tH0k= =H8Uk -----END PGP SIGNATURE-----
