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Dear Arun,

it's been a while for my last PCR, so take my comment with caution:
33bases seems very long for a primer especially if it is only for a
point mutation. Could you trim it down to 20-25
bases? I would cut at the downstream side.
Tim

On 02/24/2012 10:05 AM, Arun Kumar wrote:
> can any one help me in suggesting that what mistake i have did in my
> mutagenic pcr . actually my problem is my primer annealing
> temperature is 81degree. im using phusion pol enzyme. i have made
> many trial, i.e., made annealing at 68 and then followed 2 step pcr
> method and then added 1micro lit of dmso to 50micro lit of pcr mix
> etc.. but till now i couldn't get my desire point mutation. my primer
> length is about 33 and the mutation id at the centre of the primer. 
> can anyone help me what i can improve to get result or what mistake i
> had did.. thank you all the members in advance, cheers, Arun
> 

- -- 
Dr Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen

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