-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Dear Donghui,
even within one program (clustalw) you would get different results by picking different weighting schemes (clustalx: Aligment->Alignment Parameter -> Multiple Alignment Parameter: BLOSUM, PAM, Gonnet...). As with any software I would assume the developers know best what they are doing and recommend to stick to the defaults unless you know what you are doing. Regards, Tim On 05/15/12 08:02, wu donghui wrote: > Dear all, > > I want to know your suggestions about current protein sequence > alignment programs. It seems that different programs give different > alignment results such as from analysis of Clustal W and MULTALIN. > Thanks for any input or comments. > > Best regards, > > Donghui > - -- - -- Dr Tim Gruene Institut fuer anorganische Chemie Tammannstr. 4 D-37077 Goettingen GPG Key ID = A46BEE1A -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.12 (GNU/Linux) Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/ iD8DBQFPsgOYUxlJ7aRr7hoRArwKAKCqhK2012Ihnof7xjRzyao7GI8xpgCfZj/G VfD3ly3bmqycO0mX888oYfE= =7v6r -----END PGP SIGNATURE-----
