You could use Laskowski's surfnet, http://www.biochem.ucl.ac.uk/~roman/surfnet/surfnet.html
HTH, Daniel ------------------------------ On Thu, May 31, 2012 3:59 PM ART Allan Pang wrote: >A list that you might want to check if it is useful for you. > >http://www.caver.cz/index.php?sid=133 > >Enjoy. > >Allan > >Quoting "Zhou, Tongqing (NIH/VRC) [E]" <[email protected]>: > >> Dear All, >> >> I am looking for a way to calculate the size of a protein cavity which is >> occupied by a loop from a ligand protein. The goal is to see what's the >> maximum length of peptide allowed in this cavity. >> >> Thanks, >> >> Tongqing >> >> Tongqing Zhou, Ph.D. >> Staff Scientist >> Structural Biology Section >> Vaccine Research Center, NIAID/NIH >> Building 40, Room 4609B >> 40 Convent Drive, MSC3027 >> Bethesda, MD 20892 >> (301) 594-8710 (Tel) >> (301) 793-0794 (Cell) >> (301) 480-2658 (Fax) >> ****************************************************************************** >> The information in this e-mail and any of its attachments is confidential >> and may contain sensitive information. It should not be used by anyone who >> is not the original intended recipient. If you have received this e-mail in >> error please inform the sender and delete it from your mailbox or any other >> storage devices. National Institute of Allergy and Infectious Diseases >> shall not accept liability for any statements made that are sender's own >> and not expressly made on behalf of the NIAID by one of its representatives. >> ****************************************************************** >> >> > > > >--Allan Pang > >PhD Student > >G35 Joseph Priestley Building >Queen Mary University of London >London >E1 4NS > >Phone number: 02078828480 > >Twitter: @xerophytes
