Ah thanks, I've managed to get it sorted out. In case anyone else has this issue, I downloaded the CCP4 source code, increased MAX3D in fsearch.f, and recompiled. I first built CCP4 (./configure && make) and then fsearch explicitly (cd src && make fsearch).
Thanks, Jason. -- Jason Busby PhD Student Laboratory of Structural Biology School of Biological Sciences University of Auckland Thomas Building 110 3a Symonds St Private Bag 92019 Auckland 1142 New Zealand ph: +64 9 3737599 ext 84155 fx: +64 9 3737414 On 14/06/2012, at 9:17 AM, Pete Meyer wrote: > Jason, > > It seems like you're on the right track - it's usually not a problem to > increase array sizes and rebuild. > > How are you building (aka "cd $CCP4/src; make fsearch" or something else)? > If you're calling the fortran compiler (or ld) directly, it looks like > there's an a problem with the library options or search paths. > > Pete > > Jason Busby wrote: >> Hi, >> I am trying to run fsearch to do molecular replacement from a SAXS envelope, >> but it gives an error: FSEARCH: *out of allocated memory* >> I assume this is because of my large unit cell: 133.9180 147.8250 >> 274.7790 90.0000 90.0000 90.0000 >> Is it possible to increase the amount of memory available to fsearch? I >> have tried increasing MAX3D in the fsearch source, but could not get it to >> link on my system (ld: symbol(s) not found). >> I'm running ccp4 6.2.0 on Mac OS X 10.6.8 >> Any help would be appreciated. >> Thanks, >> Jason. >> -- >> Jason Busby >> PhD Student >> Laboratory of Structural Biology >> School of Biological Sciences >> University of Auckland >> Thomas Building 110 >> 3a Symonds St >> Private Bag 92019 >> Auckland 1142 >> New Zealand >> ph: +64 9 3737599 ext 84155 >> fx: +64 9 3737414 >
