Hi, I'm not sure I understand why you can't calculate the maps using a tool of your preference if model and data files are available in PDB? Am I missing something?
I, for example, just typed phenix.fetch_pdb 3tvn --maps and got mFo-DFc and 2mFo-DFc maps in about 20 seconds. In fact it took me more time reading the original post and writing this reply -;) Pavel On Wed, Aug 8, 2012 at 2:31 PM, Katherine Sippel <[email protected] > wrote: > The 3tvn coordinates/SF were released today. I'm not sure what the lag > time is between the PDB and EDS but you'd probably need to download the > structure factors and generate the map yourself. > > If you're not in a super rush I know the person who refined that specific > PDB and I may be able to get you a copy of her final maps to send you > off-board once she gets back from vacation. > > Cheers, > Katherine > > > > On Wed, Aug 8, 2012 at 3:39 PM, Shya Biswas <[email protected]> wrote: > >> Hi all, >> >> I was trying to get maps using the *fetch PDB and Map using EDS option*in >> coot, however the map would not open I am using coot version 0.6.2 was >> wondering if anybody else had similar problems and how to fix this, the >> following is the error message I get. It used to work fine with a previous >> version of coot. >> >> >> >> CCP4MTZfile: open_read - File missing or corrupted: >> coot-download/3tvn_sigmaa.mtz >> INFO:: not an mtz file: coot-download/3tvn_sigmaa.mtz >> ERROR: no f_cols! >> ERROR: no phi_cols! >> valid_labels(coot-download/3tvn_sigmaa.mtz,FOFCWT,PHFOFCWT,,0) returns 0 >> >>>>>> CCP4 library signal library_file:End of File (Error) >> raised in ccp4_file_raw_read <<<<<< >> >>>>>> System signal 0:Success (Error) >> raised in ccp4_file_rarch <<<<<< >> >>>>>> CCP4 library signal library_file:End of File (Error) >> raised in ccp4_file_raw_read <<<<<< >> >>>>>> System signal 0:Success (Error) >> raised in ccp4_file_readchar <<<<<< >> >>>>>> CCP4 library signal mtz:Read failed (Error) >> raised in MtzGet <<<<<< >> CCP4MTZfile: open_read - File missing or corrupted: >> coot-download/3tvn_sigmaa.mtz >> INFO:: not an mtz file: coot-download/3tvn_sigmaa.mtz >> ERROR: no f_cols! >> ERROR: no phi_cols! >> WARNING:: label(s) not found in mtz file coot-download/3tvn_sigmaa.mtz >> FOFCWT PHFOFCWT >> WARNING:: -1 is not a valid molecule in set_scrollable_map >> >> thanks, >> Shya >> >> >
