Hi There is a server version of X3DNA called w3DNA...does the same job..
Best Arko On Tue, Aug 28, 2012 at 10:09 AM, Miguel Ortiz Lombardía < [email protected]> wrote: > Le 28/08/12 09:57, cuisheng2007 a écrit : > > Dear all: > > > > Is there software or web-server that can measure DNA geometry (PDB > > coordinates) precisely, such as groove width, helix diameter, helix > > axis, base tilt angle, helix rise per base pair… > > > > It is surely doable to measure and estimate them manually, but I am just > > wondering if there are better ways or automatic ways. > > > > Many thanks > > > > sheng > > > > > > > > > > > > Dear Sheng, > > There are a number of them; these are three of them: > > Freehelix: ftp://ndbserver.rutgers.edu/NDB/programs/freehelix98/ > Curves+: http://gbio-pbil.ibcp.fr/Curves_plus/Curves+.html > X3DNA: http://x3dna.org/ > > Cheers, > > -- > Miguel > > Architecture et Fonction des Macromolécules Biologiques (UMR7257) > CNRS, Aix-Marseille Université > Case 932, 163 Avenue de Luminy, 13288 Marseille cedex 9, France > Tel: +33(0) 491 82 55 93 > Fax: +33(0) 491 26 67 20 > mailto:[email protected] > http://w2.afmb.univ-mrs.fr/Miguel-Ortiz-Lombardia > -- *Arka Chakraborty* *ibmb (Institut de Biologia Molecular de Barcelona)** **BARCELONA, SPAIN** *
