I decided to upgrade my MacBook Pro to OS X 8.0 (previously 10.6), and update my coot and CCP4 programs at the same time (now seems like a bad idea). I use the precompiled library from the Scott Lab, so I followed the directions on his website. I did the following:
Installed new X11 (from Xquartz) Installed "Command Line Tools (OS X Mountain Lion) for Xcode - August 2012" curl -O http://psbmini.ucsc.edu/~wgscott/downloads/fink_for_10.8_64bit_base_install_aptsources_sw.tgz sudo mv fink_for_10.8_64bit_base_install_aptsources_sw.tgz /. sudo tar xvfz fink_for_10.8_64bit_base_install_aptsources_sw.tgz source /sw/bin/init.sh fink selfupdate fink scanpackages sudo apt-get update sudo apt-get dist-upgrade sudo apt-get install coot ccp4 But now Fink is in the /sw directory instead of the /sw64 directory, and the programs like coot seem to only be in the /sw64/bin directory. If I try to run coot after sourcing /sw/bin/init.sh it cannot find coot (because it isn't there), and if I source /sw64/bin/init.sh it runs the older version of coot. What am I do wrong? Should the programs be in /sw or /sw64? Should I delete old /sw64 directory? BTW I got an error message during the installation that "Err http://psbmini.ucsc.edu stable/main gcc46-shlibs 4.6.3-1000 404 Not Found" Sorry for the dumb question. Bill
