Hi, Yeah, thanks for the help. I've noticed that it needs to be for the chain object, so I'll just modify the PDB accordingly,
Cheers, C On Tue, 2012-09-25 at 18:49 +0200, Sabine Schneider wrote: > Hi Chris, > > If you select the two atoms in 'editing mode' and type 'bond' at the > command line, pymol should draw a bond between them (if they are in the > same object that is). > > Sabine > > > On 09/25/2012 06:36 PM, Christopher Browning wrote: > > Hi, > > > > I have a question about how to join two atoms together so that in Pymol > > a bond is drawn between them. I have 2 sugar molecules that are > > covalently bound, but in the the PDB they are separate sugar molecules > > and they need to be joined together by a single bond. Do I have to > > annotate the PDB file with something like "CONNECT" or "JOIN" or "LINK"? > > These are the two atoms I'd like to join. > > > > > > ATOM 19317 C2 SIA Y 1 20.503 35.557 43.691 1.00 22.97 > > C > > ATOM 19387 O9 SLB Z 1 21.630 36.539 45.311 1.00 28.53 > > O > > > > > > Thanks, > > > > Chris > > > > > > > -- Dr. Christopher Browning Post-Doctor to Prof. Petr Leiman EPFL BSP-416 1015 Lausanne Switzerland Tel: 0041 (0) 02 16 93 04 40
