Thanks Boaz, CCP4mg looks similar to Pymol. Is there any advantage to using it over pymol? I have the used APBS plugin for pymol but I am really looking for just the selection around the active site and found this hard to do using APBS (although I am not very good at using APBS).
-Yarrow > ccp4mg is another good program for this. > > > Boaz Shaanan, Ph.D. > Dept. of Life Sciences > Ben-Gurion University of the Negev > Beer-Sheva 84105 > Israel > > E-mail: [email protected] > Phone: 972-8-647-2220 Skype: boaz.shaanan > Fax: 972-8-647-2992 or 972-8-646-1710 > > > > > > ________________________________________ > From: CCP4 bulletin board [[email protected]] on behalf of Yarrow > Madrona [[email protected]] > Sent: Saturday, October 06, 2012 4:48 PM > To: [email protected] > Subject: [ccp4bb] calculating dialectric properties of enzyme active site > > Hello CCP4 list readers, > > Does anyone know how to calculate the dielectric properties of an enzyme > active site? I would like to compare the polarity/hydrophobicity of > similar proteins and different mutants. > > Thank you. > > > -- > Yarrow Madrona > > Graduate Student > Molecular Biology and Biochemistry Dept. > University of California, Irvine > Natural Sciences I, Rm 2403 > Irvine, CA 92697 > > -- Yarrow Madrona Graduate Student Molecular Biology and Biochemistry Dept. University of California, Irvine Natural Sciences I, Rm 2403 Irvine, CA 92697
