1.8.1-1168 also has this problem.

I found this problem existed with some dataset, but not all dataset.

1.8.1 give better map, so I built model with 1.8.1 map and go back to
1.7.3 before I deposit the structure to PDB.

When I compared the B factor from 1.8.x and 1.7.3, I found
B(1.7.3)=B(1.8.x)+Boverall(1.8.x). Perhaps this is the problem.

2012/11/3, Pavel Afonine <>:
> Joao,
> I am using the latest version of phenix 1.8.1-1168
> 1.8.1-1168 should not have that "problem".
> If you suspect there is still a problem, you can send me the data and model
> files off list, explain what exactly the problem is, and I will have a look
> right away.
> FYI: there is Phenix mailing list for Phenix-specific questions, where I
> can also explain in great details the behavior with the B-factors you
> observe.
> All the best,
> Pavel

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