-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 If you don't want scala to keep your Bijvoet-pairs separate, you should uncheck the appropriate button in the ccp4i-GUI. However, since you have SIGF_New, your mtz-file already contains the merged Bijvoet-pairs.
Scala is not a refinement programm and you ought to check the input file for phenix where to tell it to use the merged data rather than the unmerged data, and also need to check the phenix log-file to figure out why it calculates the completeness so low. Regards, Tim On 12/04/2012 11:55 PM, Yarrow Madrona wrote: > Hello CCP4 users, > > My column labels from scala include: > > SIGF_New(+) and F_New as well as F_New(-) and SIGF_new(-) > > But also contains: SIGF_New, F_New DANO_New and SIGDANOW_NEW > > When I refine (phenix) using SIGF_NEW(+) and SIGF_New(-) my > completeness does not match what comes out of the scala log file > (97%). Instead it is only 90% > > But when I refine using Intensities and let phenix.refine run > truncate I get the expected completeness of 97% in my log file. > > Is there something special you have to do in Scala to tell it to > combine anomalous and non-anomalous data for refinement using > structure factors? > > I don't need the anomalous data so I don't need to keep it > separate. > > Thanks. > > -Yarrow > > - -- - -- Dr Tim Gruene Institut fuer anorganische Chemie Tammannstr. 4 D-37077 Goettingen GPG Key ID = A46BEE1A -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.12 (GNU/Linux) Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/ iD8DBQFQvxVjUxlJ7aRr7hoRAgyeAJ4t8V7H9aDfzuf1lqT3RzULYmSSRQCg8Bj+ zgcEB/KN7LIVONVPcIz0nFg= =fL/K -----END PGP SIGNATURE-----
