I think the help message refers to another program. Anyway, it's an extremely simple script - having examined the code, the command-line invocation is:
labelit.png input_file [output_file] and that's it - no other options available. But Nick or I will fix it so it prints something more useful if run without arguments. -Nat On Fri, Jan 11, 2013 at 9:33 AM, Frank von Delft <[email protected]> wrote: > I got that error blurb too when I run without an image on the commandline. > Not very elegant. > > Try: > labelit.png --help > > > > > On 11/01/2013 16:34, Tim Gruene wrote: >> >> -----BEGIN PGP SIGNED MESSAGE----- >> Hash: SHA1 >> >> Hi Nat! >> >> How recent is recent? From today's 'phenix-online.org': >> "New Phenix version 1.8.1 now available", but >> >> tg@slartibartfast:~/uni/datasets/nk/xds_run3$ labelit.png_1.8.1-1168 >> DX-CORRECTIONS.cbf >> Traceback (most recent call last): >> File >> >> "/xtal/Suites/Phenix/phenix-1.8.1-1168/build/intel-linux-2.6-x86_64/../../labelit/command_line/png.py", >> line 27, in <module> >> OV = overlay_plain(infile,graphics_bin) >> File >> >> "/xtal/Suites/Phenix/phenix-1.8.1-1168/build/intel-linux-2.6-x86_64/../../labelit/command_line/png.py", >> line 6, in __init__ >> OverlayDriverClass.__init__(self,infile,graphics_bin) >> File >> >> "/xtal/Suites/Phenix/phenix-1.8.1-1168/labelit/command_line/overlay_distl.py", >> line 19, in __init__ >> self.I = GenericImageWorker(infile,binning=graphics_bin) >> File >> "/xtal/Suites/Phenix/phenix-1.8.1-1168/labelit/graphics/support.py", >> line 12, in __init__ >> images = ImageFiles(imagenames,labelit_commands) >> File >> >> "/xtal/Suites/Phenix/phenix-1.8.1-1168/labelit/command_line/imagefiles.py", >> line 184, in __init__ >> self.filenames = FileNames(arg_module,phil_params) >> File >> >> "/xtal/Suites/Phenix/phenix-1.8.1-1168/labelit/command_line/imagefiles.py", >> line 70, in __init__ >> self.interface3_parse_command() >> File >> >> "/xtal/Suites/Phenix/phenix-1.8.1-1168/cctbx_project/spotfinder/diffraction/imagefiles.py", >> line 138, in interface3_parse_command >> >> self.interface3_FN_factory(os.path.abspath(file),error_message="File >> name not accepted") >> File >> >> "/xtal/Suites/Phenix/phenix-1.8.1-1168/cctbx_project/spotfinder/diffraction/imagefiles.py", >> line 127, in interface3_FN_factory >> raise Exception("Input error: "+error_message) >> Exception: Input error: File name not accepted >> >> Compared to: >> tg@slartibartfast:~/uni/datasets/nk/xds_run3$ adxv -sa >> DX-CORRECTIONS.cbf DX-CORRECTIONS.tiff >> Adxv Version 1.9.8 >> Copyright (C) 1994-2011 by Andrew Arvai, Area Detector Systems Corporation >> Recognized CBF format data. >> Warning: Could not find diffrn_frame_data or diffrn_data_frame >> tg@slartibartfast:~/uni/datasets/nk/xds_run3$ identify >> DX-CORRECTIONS.tiff >> DX-CORRECTIONS.tiff TIFF 768x768 768x768+0+0 8-bit PseudoClass 256c >> 592KB 0.000u 0:00.000 >> >> Cheers, >> Tim >> >> On 01/10/2013 09:59 PM, Frank von Delft wrote: >>> >>> Brilliant - thanks Nat!! Easy to work around that feature. >>> >>> And thanks Nick!! >>> >>> >>> >>> >>> -------- Original Message -------- Subject: Re: [ccp4bb] >>> Convert cbf to png/tiff? Date: Thu, 10 Jan 2013 12:47:21 -0800 >>> From: Nat Echols <[email protected]> To: Frank von >>> Delft <[email protected]> >> >> >> >> >> >> >>> >>> >>> Using any recent Phenix distribution: >>> >>> labelit.png file_name >>> >>> For reasons unknown to me, the output is named "plain.png" - I >>> will bug Nick about this. >>> >>> On Thu, Jan 10, 2013 at 12:36 PM, Frank von Delft >>> <[email protected]> wrote: >>>> >>>> Hello all - anybody know an easy way to convert CBF images >>>> (Pilatus) into something lossless like tiff or png? >>>> >>>> Ideally *easy* as in r e a l l y e a s y and not requiring >>>> extensive installation of dependencies and stuff. Because then I >>>> might as well write my own stuff using cbflib and PIL in python. >>>> >>>> Thanks! phx >>> >>> >>> >>> >> - -- - -- >> Dr Tim Gruene >> Institut fuer anorganische Chemie >> Tammannstr. 4 >> D-37077 Goettingen >> >> GPG Key ID = A46BEE1A >> >> -----BEGIN PGP SIGNATURE----- >> Version: GnuPG v1.4.12 (GNU/Linux) >> Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/ >> >> iD8DBQFQ8D8kUxlJ7aRr7hoRAkcsAJ9Z4JmZ3zAvFYDRMaGbzunMYTjLNACfQWBP >> s3YM17LqF9zvCsAK8ezG8xQ= >> =hXlq >> -----END PGP SIGNATURE-----
