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Dear Ian,
did you source the ccp4 input script so that variables like CCP4 are set?
IOError: [Errno 2] No such file or directory: '/libexec/ccp4um'
looks like CCP4 is an empty string.
Best,
Tim
On 01/17/2013 01:44 PM, Ian Tickle wrote:
> Dear Eugene
>
> ccp4um doesn't work for me at all (update worked fine up until
> #012).
>
> node066:/software/CCP4-6.3.0/ccp4-6.3.0/bin-45> ccp4um Traceback
> (most recent call last): File "ccp4um", line 17, in <module>
> shutil.copy2 ( fname,fname1 ) File
> "/software/python/python_v2.7.3_64/lib/python2.7/shutil.py", line
> 128, in copy2 copyfile(src, dst) File
> "/software/python/python_v2.7.3_64/lib/python2.7/shutil.py", line
> 82, in copyfile with open(src, 'rb') as fsrc: IOError: [Errno 2] No
> such file or directory: '/libexec/ccp4um'
>
> Did I do something wrong? Or is it just that there's nothing to
> update?
>
> Cheers
>
> -- Ian
>
>
> On 16 January 2013 15:11, <eugene.krissi...@stfc.ac.uk> wrote:
>
>> Dear Andreas,
>>
>> Sorry for late response to your post and confusion with the
>> updater. For technical reasons (Windows does not like names
>> containing "update" :)), the updater was renamed into ccp4um
>> (ccp4 update manager) and is found in $CCP4/bin.
>>
>> I hope this helps,
>>
>> Eugene
>>
>>
>> Dear CCP4 maintainers,
>>
>> I've come to appreciate the CCP4 update functionality, which, in
>> our multiuser network (RHEL 6.2), I used to invoke by calling
>> $CCP4/bin/update.
>>
>> Update 012 removed that script with no immediately obvious
>> replacement. Was that on purpose? Is there a way of updating
>> CCP4 from the command line without calling CCP4i?
>>
>> Thanks
>>
>>
>> Andreas
>>
>>
>> (from update.log:
>>
>> [Thu Jan 3 2013 11:00:21] Ready to make changes
>>
>> --- applying update 6.3.0-012 --- update header read --- creating
>> restore package, please wait ... --- done ... file
>> '/csb/soft/Linux64/share/ccp4-6.3.0/bin/update' removed ... file
>> '/csb/soft/Linux64/share/ccp4-6.3.0/lib_exec/update' removed ...
>> file '/csb/soft/Linux64/share/ccp4-6.3.0/lib_exec/_update'
>> removed ... directory
>> '/csb/soft/Linux64/share/ccp4-6.3.0/lib_exec' removed
>>
>>
>> some more blah blah)
>>
>>
>> -- Andreas Förster, Research Associate Paul Freemont & Xiaodong
>> Zhang Labs Department of Biochemistry, Imperial College London
>>
>> -- Scanned by iCritical.
>>
>>
>
- --
- --
Dr Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen
GPG Key ID = A46BEE1A
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