Hi all, I am sorry that I ask something a little bit irrelevant here.
I am a newbie in Linux, and recently installed Coot, Pymol and VMD on Ubuntu 12.04. It took me a while to figure out a strange conflict among them on my machine. If I remove the mesa-swx11 package, Coot becomes crazily slow. However, if I include that package, which requires the remove of mesa-glx, the backgrounds of Pymol and VMD becomes transparent, and you can barely see the molecule. Does anyone have some suggestions? Thank you so much! Best, Chen
