(Is it time to change the macabre title of this thread? If I were Phil
it'd give me a jolt every time time I read it... "what have I wrought!")
phx
On 08/03/2013 11:35, Tim Gruene wrote:
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Dear Roger,
apart from Francois' suggestion using strace you can also check the
space available in /tmp, the amount of memory available on these
machines (using the command 'free') and run memcheck to test the
memories health.
Regards,
Tim
On 03/07/2013 06:47 PM, Roger Rowlett wrote:
OK, here is a strange one: I have 4 client machines (3 absolutely
identical hardware) all running ccp4i from a central server and 2
of the 4 machines (always the same 2) will fail when running a
certain scala job with a "child killed" error. I can run the same
job on the 2 "good" machines. All the machines call the same ccp4
source file in .tcshrc. I'm stumped. It's probably some sort of
cryptic permissions error or something like that. Anyone seen
anything like this and have some clue as to the origin of the
crash? AFAIK, it only happens running scala in 6.3.0. The home
directories for users are served via NFS, but that should be the
same for all machines.
Log file follows:
<!-- CCP4 HTML LOGFILE --> <pre>#CCP4I VERSION CCP4Interface 2.2.0
#CCP4I SCRIPT LOG scala #CCP4I DATE 05 Mar 2013 14:28:22 #CCP4I
USER xrdcamp4 #CCP4I PROJECT chem385 #CCP4I JOB_ID 4 #CCP4I SCRATCH
/tmp/xrdcamp4 #CCP4I HOSTNAME malagueta #CCP4I PID 18904 </pre>
***************************************************************************
* Information from CCP4Interface script
***************************************************************************
The program run with command: /usr/local/xtal/ccp4-6.3.0/bin/scala HKLIN
"/home/xrdcamp4/chem385/Chem385-2013Srefinaloutput.mtz" HKLOUT
"/tmp/xrdcamp4/chem385_4_1_mtz.tmp" SCALES
"/home/xrdcamp4/chem385/chem385_4.scala" ROGUES
"/home/xrdcamp4/chem385/chem385_4_rogues.log" NORMPLOT
"/home/xrdcamp4/chem385/chem385_4_normplot.xmgr" ANOMPLOT
"/home/xrdcamp4/chem385/chem385_4_anomplot.xmgr" PLOT
"/home/xrdcamp4/chem385/chem385_4_surface_plot.plt" CORRELPLOT
"/home/xrdcamp4/chem385/chem385_4_correlplot.xmgr" ROGUEPLOT
"/home/xrdcamp4/chem385/chem385_4_rogueplot.xmgr" has failed with
error message child killed: kill signal
***************************************************************************
#CCP4I TERMINATION STATUS 0 "child killed: kill signal" #CCP4I
TERMINATION TIME 05 Mar 2013 14:28:22 #CCP4I MESSAGE Task failed
- --
- --
Dr Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen
GPG Key ID = A46BEE1A
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