LSQMAN aligns just about anything, incl. DNA and RNA -
http://xray.bmc.uu.se/usf/lsqman_man.html
There's a ready-to-use macro that will do all the hard work for you -
ftp://xray.bmc.uu.se/pub/gerard/omac/align_rna.lsqmac - there's one line that
may need editing, it defines the name of the nominal "CA" atom and currently
reads: & mytype C4*
--DVD
On Fri, 12 Apr 2013, Veerendra Kumar (Dr) wrote:
Dear CCP4 members,
Is there any program to superimpose the DNA structures? I also want to measure
the relative domain rotation angle. I tried using DynDom but it does not work
for me.
Can someone suggest a program which can output the rotation angles?
Thank you
Best Regards
Veerendra kumar
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Little known gastromathematical curiosity: let "z" be the
radius and "a" the thickness of a pizza. Then the volume
of that pizza is equal to pi*z*z*a !
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