Is there any consensus about the accepted format for this?
I believe Garib uses LINKR to add a link name to the record, (cant find a
description in the documentation though???)
but also in the documentation REFMAC is said to provide a link between
symmetry related like this
with the target distance here
LINK 1 P DG A 1 1.61000 O3' DC A 2
1555 6554
i
But REFMAC a) ignores the given distance and b) writes it out as :
LINK P DG A 1 O3' DC A 2 1555 2554
1.48
This is in agreement with the PDB definition but with a wrong distance -
presumably derived in the innards of the dictionary:
PDB LINK definition
12345678901234567890123456789012345678901234567890123456789012345678901234567890
LINK O GLY A 49 NA NA A6001 1555 1555 2.98
LINK OG1 THR A 51 NA NA A6001 1555
1555 2.72
12345678901234567890123456789012345678901234567890123456789012345678901234567890
LINK O GLY A 49 NA NA A6001 1555 1555 2.98
LINK OG1 THR A 51 NA NA A6001 1555 1555 2.72
coot seems to refuse to read the LINKR at all!
Confused Eleanor
