Dear colleagues,
I have the same problems as Peer Mittl once had.
Was this solved and what was the solution?
Running arpWarp the job terminates with the message:
Refmac_5.7.0032: Open failed: File:
/software/apps/ccp4/ccp4-6.3.0/lib/data/monomers/list/mon_lib_list.cif
However the mon_lib_list.cif is readable to my user?
[x_marmo@triolith3 CCP4]$ more
/software/apps/ccp4/ccp4-6.3.0/lib/data/monomers/list/mon_lib_list.cif
global_
_lib_name mon_lib
_lib_version 5.39
_lib_update 06/11/12
#---------------------------------
Here is the output of the ls -l command suggested by Tim Gruene
[x_marmo@triolith3 CCP4]$ ls -l
/software/apps/ccp4/ccp4-6.3.0/lib/data/monomers/list/mon_lib_list.cif
-rw-r--r-- 1 raber nsc 1078257 May 15 08:15
/software/apps/ccp4/ccp4-6.3.0/lib/data/monomers/list/mon_lib_list.cif
At the end of the warpNtrace logfile is the following information:
[x_marmo@triolith3 CCP4]$ tail -22
/home/x_marmo/MexR/CCP4/2_warpNtrace_refine.last.log
B value outliers 10.000
NCS outliers 20.000
---------------------------------------------------------------
Input file :arp_0.pdb_start
Size of lib_com.fh(bytes) : 118100416
Open failed: Unit: 7, File:
/software/apps/ccp4/ccp4-6.3.0/lib/data/monomers/list/mon_lib_list.cif
(logical:
/software/apps/ccp4/ccp4-6.3.0/lib/data/monomers/list/mon_lib_list.cif)
<B><FONT COLOR="#FF0000"><!--SUMMARY_BEGIN-->
Refmac_5.7.0032: Open failed: File:
/software/apps/ccp4/ccp4-6.3.0/lib/data/monomers/list/mon_lib_list.cif
Times: User: 0.3s System: 0.0s Elapsed: 0:00
</pre>
</html>
<!--SUMMARY_END--></FONT></B>
<B><FONT COLOR="#FF0000"><!--SUMMARY_BEGIN-->
QUITTING ... ARP/wARP module stopped with an error message:
REFMAC5
*** Look for error message in the file:
/home/x_marmo/MexR/CCP4/2_warpNtrace_refine.last.log
[x_marmo@triolith3 CCP4]$
What is wrong here?
Best regards,
Martin
