On 05/29/2013 04:30 PM, Gang Dong wrote:
Try FTsite: http://ftsite.bu.edu/.
I have seen people using metapocket:
http://projects.biotec.tu-dresden.de/metapocket/
Gang
On Wed, May 29, 2013 09:17, Karsten Niefind wrote:
Dear colleagues,
please allow me to ask crystallography experts for advice in a
bioinformatics issue:
Which methods (programs, servers) would you use and recommend to search
computationally on the surface of a protein/protein complex (> 1100 aa)
for concave and
convex interaction sites with potential ligands of any kind
(preferentially other proteins and
peptides, but also nucleic acids or small metabolites and with emphasis on
"potential", i.e. if
no concrete ligand is known)?
Thanks for any help from
Karsten Niefind
-------------------------------
Karsten Niefind
University of Cologne
Department of Chemistry
Institute of Biochemistry
Otto-Fischer-Str. 12-14
D-50674 Cologne
Tel.: +49 221 470 6444
Fax: +49 221 470 3244
