On Thu, Jun 6, 2013 at 2:37 PM, GRANT MILLS <[email protected]
> wrote:

>  My script seems to miscount the columns and read the two as one column,
> does anyone know how to avoid this? (PS, I've googled this like crazy but I
> either don't understand or the link is irrelevant)
>

You should resist the temptation to write your own PDB parser; that way
lies pain and suffering.  There are multiple free libraries for Python that
can be used for this task - I recommend either CCTBX or BioPython (probably
the latter if you don't need to do very much with the models).

-Nat

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