-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Dear G,
if you only have the sequence, I suggest a BLAST search (http://blast.ncbi.nlm.nih.gov/Blast.cgi), if you do have the coordinates, you can use the DALI server (http://ekhidna.biocenter.helsinki.fi/dali_server/start) Regards, Tim On 08/22/2013 05:14 PM, Gloria Borgstahl wrote: > We have a protein sequence that probably contains OB folds. What > is the best way to search for the top structural homologs to this > sequence in the pdb? G > - -- - -- Dr Tim Gruene Institut fuer anorganische Chemie Tammannstr. 4 D-37077 Goettingen GPG Key ID = A46BEE1A -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.14 (GNU/Linux) Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/ iD8DBQFSFiufUxlJ7aRr7hoRAiCLAKCHDkluz9I/hs437VP1eATh+OWJYwCeIwT3 xDwgPgkom1ipFiHpBaVYhxg= =bB6q -----END PGP SIGNATURE-----
