It's definitely possible to rig, say, autodock to run the same small
molecule over every protein in the PDB. Results, of course, should be
taken with a grain of salt.
On Mon, 2013-10-14 at 20:53 +0900, L wrote:
> Hi all,
>
>
> I'm looking for a way to find/predict protein partner(s) for our
> ligand (small chemical; MW<500 Da).
>
>
> There're lots of servers and softwares to find/predict a ligand with
> known protein structure, but hardly find a way to discover potential
> protein partner(s) with known ligand.
>
>
> That would be great if anyone give me a clue. Web server, software,
> any suggestion are all appreciated.
>
>
> Thank you
>
>
> L
--
"Hurry up before we all come back to our senses!"
Julian, King of Lemurs
