Molprobity doesn't analyze density fit. New PDB validation now reports density fit analysis etc.
From: Bosch, Juergen [mailto:[email protected]] Sent: Thursday, October 31, 2013 10:28 AM To: Debasish Chattopadhyay Cc: [email protected] Subject: Re: [ccp4bb] PDB structure validation yes, indeed. visit this site and make sure you get all green lights http://molprobity.biochem.duke.edu Jürgen On Oct 31, 2013, at 11:25 AM, Debasish Chattopadhyay wrote: I was wondering if there is a way to generate a PDB validation report before depositing the coordinates so that one can go back and make necessary corrections to the file before deposition. It will save a lot time and perhaps would improve the quality of deposited structures. Debasish Chattopadhyay University of Alabama at Birmingham CBSE-250 1025 18th Street South, Birmingham, Al-35294 USA Ph: (205)934-0124; Fax: (205)934-0480 ...................... Jürgen Bosch Johns Hopkins University Bloomberg School of Public Health Department of Biochemistry & Molecular Biology Johns Hopkins Malaria Research Institute 615 North Wolfe Street, W8708 Baltimore, MD 21205 Office: +1-410-614-4742 Lab: +1-410-614-4894 Fax: +1-410-955-2926 http://lupo.jhsph.edu
