Hi all ..
loggraph seems to be broken on Redhat 6.5 . It may be a "blt" error. Can
someone confirm that they can get loggraph to work on Redhat Enterprise 6.5
with the ccp4 provided binaries.
Sadly Redhat nor Activestate provide "blt" replacements
In all cases the loggraph starts a blank window ready to plot a graph and
then fails with the error
"Error in startup script: syntax error in expression "10 11 12 + 12": extra
tokens at end of expression
while executing
"expr [string trim $ele] + $data(NCOLUMNS) "
(procedure "extract_tables_from_GRAPH" line 44)
invoked from within
"extract_tables_from_$filetype $input $arrayname"
(procedure "extract_tables_from_file" line 31)
invoked from within
"extract_tables_from_file $system(SCRIPT) $system(FORMAT) data"
invoked from within
"if { $system(SCRIPT) != "" } {
if { ![ElementExists system FORMAT] || $system(FORMAT) == "" } {
set system(FORMAT) [GetFileFormat $system(SCRI..."
(file
"/home/yong.tang/ccp4_root/ccp4-6.4.0/share/ccp4i/loggraph/loggraph.tcl"
line 2324)
invoked from within
"source [file join $env(CCP4I_TOP) loggraph loggraph.tcl]"
(file
"/home/yong.tang/ccp4_root/ccp4-6.4.0/share/ccp4i/bin/loggraph.tcl" line 83)
"
Sadly We cannot go back to using Ubuntu where this was working.
The CCP4 provided blt, bltsh and wish binaries seem to work fine ..its
only loggraph that fails .
We are using the current ccp4 installed yesterday.
I also tried using Activestate wish and combining it with ccp4 provided
bltsh ..but in that case I get the error :
package require blt
Thanks
Hari ( and Yong)
On Wed, Apr 2, 2014 at 2:33 PM, Yong Tang <[email protected]> wrote:
> Hello All,
>
> Further to my earlier email..I am running ccp4 6.4 , on 64 bit Redhat
> Linux 6.5
>
> I cannot see loggraphs with View-Files-From-Job - View Log Graphs--
>
> That throws an error in the shell. This is the same error I see when coot
> finishes refmac5 as well.
> It seems that the loggraph tcl script is broken somehow.
>
> Any ideas on how to fix.
> Thank you for your help
>
>
> Yong
>
>
> Top level CCP4 directory is /home/yong/ccp4_root/ccp4-6.4.0
> Using CCP4 programs from /home/yong/ccp4_root/ccp4-6.4.0/bin
> Error in startup script: syntax error in expression "10 11 12 + 12": extra
> tokens at end of expression
> while executing
> "expr [string trim $ele] + $data(NCOLUMNS) "
> (procedure "extract_tables_from_GRAPH" line 44)
> invoked from within
> "extract_tables_from_$filetype $input $arrayname"
> (procedure "extract_tables_from_file" line 31)
> invoked from within
> "extract_tables_from_file $system(SCRIPT) $system(FORMAT) data"
> invoked from within
> "if { $system(SCRIPT) != "" } {
> if { ![ElementExists system FORMAT] || $system(FORMAT) == "" } {
> set system(FORMAT) [GetFileFormat $system(SCRI..."
> (file
> "/home/yong.tang/ccp4_root/ccp4-6.4.0/share/ccp4i/loggraph/loggraph.tcl"
> line 2324)
> invoked from within
> "source [file join $env(CCP4I_TOP) loggraph loggraph.tcl]"
> (file
> "/home/yong.tang/ccp4_root/ccp4-6.4.0/share/ccp4i/bin/loggraph.tcl" line 83)
>
>
>
> On Wed, Apr 2, 2014 at 2:22 PM, Yong Tang <[email protected]> wrote:
>
>> Hi ,
>> I have just switched to a new computer with ccp4 6.4 and binary coot
>> installed from Paul Emsleys nightlies.
>>
>> When I run refmac5 inside coot or run refmac5 inside ccp4, the loggraph
>> does not pop-up at the end of a refmac run. I looked everywhere in settings
>> inside ccp4i or inside coot and could not re-enable loggraph popup.
>>
>> Can someone tell me what setting I need to change to have the old style
>> loggraphs popup ? .
>>
>> Thanks
>>
>> Yong
>>
>> --
>> Yong Tang
>>
>
>
