Any chance validation reports will ever be made for obsoleted entries? Eric
On Wed, Apr 16, 2014 at 1:01 PM, Gerard DVD Kleywegt <ger...@xray.bmc.uu.se>wrote: > Hi all, > > You may not have noticed, but 19 March 2014 was VR Day - the day that new > style wwPDB validation reports for all X-ray structures were made publicly > available - see http://www.wwpdb.org/news/news_2014.html#18-March-2014 > > The validation-related files for individual X-ray PDB entries can be > accessed through the web sites and ftp sites of the various wwPDB partners. > Speaking for PDBe, if you go to the summary page of an X-ray PDB entry, for > instance: > > http://pdbe.org/1cbs > > you will see the "percentile sliders" displayed in the PDBportfolio widget > (http://pdbe.org/portfolio) on the right of the page. (Clicking the big > white arrow will start a slideshow of images related to this entry.) The > legend of the percentile-slider plot contains a direct link to the > validation report (as a PDF file; in this case http://www.ebi.ac.uk/pdbe/ > entry-files/1cbs_validation.pdf). > > If you are not yet familiar with these new style validation reports, have > a look here: http://www.wwpdb.org/validation-reports.html - in particular > the user guide may be of interest: http://www.wwpdb.org/ > ValidationPDFNotes.html > > If you want to download the full report (which lists all outliers for many > of the validation criteria, instead of just the worst 5 or the first 5), or > a graphic image of the percentile-slider plot, or an XML file with all > validation data in machine-readable form, go to the downloads page of any > X-ray PDB entry, either through clicking the "Downloads" link in the menu > on the left, or directly by going to a URL of the form: > > http://pdbe.org/1cbs/downloads > > The section labelled "Validation" of the table provides the relevant links. > > Note that sites that include PDBportfolio in their pages now automatically > display the percentile-slider plot and download link as well! To see this > in action, go to the EDS page (if any) of your favourite X-ray PDB entry, > e.g.: > > http://eds.bmc.uu.se/cgi-bin/eds/uusfs?pdbCode=1cbs > > Please send any comments, questions or suggestions on the new style > validation reports to validat...@mail.wwpdb.org > > Questions about PDBe-specific pages and services can be sent to > pdbeh...@ebi.ac.uk > > --Gerard > > --- > Gerard J. Kleywegt, PDBe, EMBL-EBI, Hinxton, UK > ger...@ebi.ac.uk ..................... pdbe.org > Secretary: Pauline Haslam pdbe_ad...@ebi.ac.uk >
