Hi, I love using the ESCET algorithm developed by Thomas R. Schneider, it calculates error-scaled difference distance matrices, identifies domains very precisely, generates pml of aligned and coloured molecules... I just love it.
More info: http://www.ncbi.nlm.nih.gov/pubmed/10818348 http://www.ncbi.nlm.nih.gov/pubmed/11807243 http://www.ncbi.nlm.nih.gov/pubmed/15572780 Cheers, Deborah. -- Deborah Harrus, PhD Nuclear Receptors and Epigenetics Centre de Biochimie Structurale CNRS UMR5048 / INSERM U1054 Montpellier, France ----- Mail original ----- De: "Jacob Keller" <[email protected]> À: [email protected] Envoyé: Mardi 6 Mai 2014 16:49:22 Objet: [ccp4bb] Script for Comparing Structurally-Similar Proteins Dear Crystallographers, In a former lab we had a script which would read DALI output, automatically download the structurally-similar proteins, superimpose them, and color by regions superimposed. That was in the days of O. Does anyone have a similar-functioning script for CCP4MG, pymol, or other software that I could use? I find myself often building such superpositions manually, and this must be a pretty common endeavor... Thanks, Jacob ******************************************* Jacob Pearson Keller, PhD Looger Lab/HHMI Janelia Farms Research Campus 19700 Helix Dr, Ashburn, VA 20147 email: [email protected] *******************************************
