Hi Remie, PyMOL by default sorts atoms based on their identifiers (segment, chain, residue number). Could it be that your file has segment identifiers? Try this after loading your file:
PyMOL>alter all, segi="" PyMOL>sort Cheers, Thomas On 07 Aug 2014, at 19:08, CCP4BB automatic digest system <[email protected]> wrote: > Date: Thu, 7 Aug 2014 11:19:42 -0400 > From: Remie Fawaz-Touma <[email protected]> > Subject: Chains view > > Hi everyone, > > Does anyone know how to rearrange chains when looking at a structure in PyMol > (maybe it has to be done in coot, don’t know). > > I have the ligand first now in PyMol and would like to see the sequence of > the protein first, then ligand. > > It is worth mentioning that I did reorder the chains in coot: Extensions > > Modelling > Reorder chains, and chain A is my protein, B is the ligand and C > are the waters. > > So why don’t I see the same order in PyMol and how do I fix that? > > Thanks for any help, > > Remie -- Thomas Holder PyMOL Developer Schrödinger, Inc.
