Hi Bernhard, I just built the dipeptide in PyMol. Thank you very much.
Best Regards, Oarabile M. Kgosisejo o.kgosis...@usask.ca ________________________________ From: Bernhard Lechtenberg [blechtenb...@sanfordburnham.org] Sent: September 3, 2014 12:50 PM To: Kgosisejo, Oarabile Cc: <CCP4BB@JISCMAIL.AC.UK> Subject: Re: [ccp4bb] Database for peptides in pdb format Hi, if you just want a dipeptide, the easiest is probably to build one in PyMOL: Build -> Residue -> Leucine then Proline. You can save it in PDB format using File -> Save Molecule… You can probably do the same in Coot or JLigand if you want to use CCP4 programs. Hope that helps, Bernhard Bernhard C. Lechtenberg, PhD Postdoctoral Fellow Riedl Lab Sanford-Burnham Medical Research Institute 10901 North Torrey Pines Road La Jolla, CA 92037, USA Phone: 858.646.3100 x 4216 Email: blechtenb...@sanfordburnham.org<mailto:blechtenb...@sanfordburnham.org> On Sep 3, 2014, at 11:17 AM, "Kgosisejo, Oarabile" <o.kgosis...@usask.ca<mailto:o.kgosis...@usask.ca>> wrote: Hello all, Is there a database for peptides in a pdb format? I am investigating the structure-function of a dipeptidase and I would like to dock a dipeptide, substrate (e.g. Leucine-Proline), on the active site but I have no idea where I can get the dipeptides for that. I searched in the PDB but I could not find any. Your help is appreciated Best Regards, Oarabile M. Kgosisejo o.kgosis...@usask.ca<mailto:o.kgosis...@usask.ca>
