Hello CCP4bb,
Based on suggestions from the members of CCP4bb, I used program
Curves+ to check the bend (angle) in DNA.
I have given my DNA which has two strands and 13 bases each as an
input. I got an output file where I can see other parameters inferred
from the structure.
But I am getting a message at the end of the output file which I
believe gives me answer for my question.
(E) Groove parameters
No groove analysis: P absent in strand = 1 at level = 11
Please indicate to me what could be the error in this?
Thank you all for answers,
On Wed, Oct 22, 2014 at 2:20 PM, Tim Gruene <t...@shelx.uni-ac.gwdg.de> wrote:
> Dear Sasha,
>
> you can select two pairs of three corresponding atoms at either end of
> the stand and calculate the plane normal of each set. The angle between
> the normals would be the overall bend.
>
> Best,
> Tim
>
> On 10/21/2014 09:53 PM, Sasha Pausch wrote:
> > Hello CCP4bb,
> >
> > May I know how can we calculate or use any server which can calculate the
> > overall bend in a DNA (crystal structure)?
> >
>
> --
> Dr Tim Gruene
> Institut fuer anorganische Chemie
> Tammannstr. 4
> D-37077 Goettingen
>
> GPG Key ID = A46BEE1A
>
>
