Dear Pam, the Coot bug has long been worked out - Coot is now at release version 0.8.
Best, Tim On 10/24/2014 04:02 PM, Pamela J Focia wrote: > > Until the Coot bug is worked out, why not simply change the water molecule > you want to be an ion into the atom you want it to be in the pdb file with a > text editor? > > -=pam > > > On Oct 24, 2014, at 5:09 AM, Tim Gruene > <[email protected]<mailto:[email protected]>> wrote: > > Dear Jeorge, > > from the second last thread, I guess you are using Coot 0.7.2? > Apparently this is a bug that you get around by updating Coot. > > Regards, > Tim > > On 10/24/2014 10:13 AM, jeorgemarley thomas wrote: > Hi All, > > First of all sorry to ask such simple question over here. I have added > water molecule in my protein molecule in coot, also some Ba atom. I have > added the water molecule manually as when it was added automatically the > water added everywhere it find lobes of electron density. And also when I > add Ba atom it gets converted as water molecule. > > Your kind help will be greatly appreciated > Regards > > Jeorge > > > -- > Dr Tim Gruene > Institut fuer anorganische Chemie > Tammannstr. 4 > D-37077 Goettingen > > GPG Key ID = A46BEE1A > > > ------- > ---- > > Pamela J. Focia, Ph.D. > Research Assistant Professor > > Structural Biology Facility Manager > Robert H. Lurie Comprehensive Cancer Center > in the Departments of: > Molecular Pharmacology and Biological Chemistry, Feinberg School of Medicine, > and Molecular Biosciences, Northwestern University > 303 E. Chicago Ave., S-215, Chicago 60611 > o (312)503-0848 > c (312)286-3274 > f (312)503-5349 > [email protected]<mailto:[email protected]> > > > > > > > > > -- Dr Tim Gruene Institut fuer anorganische Chemie Tammannstr. 4 D-37077 Goettingen GPG Key ID = A46BEE1A
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