Hi Venu, please send me PDB file and I will try to help.
FYI: There is Phenix mailing list for Phenix related questions. Pavel On Thu, Dec 11, 2014 at 1:07 PM, Venu V <[email protected]> wrote: > > Hello everybody, > I need some help with handling modified DNA bases in phenix refinement. > I am refining a duplex DNA structure (8 bases) that has a modified base > (2nd base) . The modification is one of the Oxygen (at position 2) on a > thymine is replaced by a Selenium. I used eLBOW of Phenix to create cif > file for this modified base and then tried to connect this hetero base to > the remaining bases. However I could not manage to get the refinement > running. > I was wondering if any body has an example of how to define the > connections for DNA that has modified bases for phenix.refine. > Thank you in advance. > Sincerely > Venu > ====== >
